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<article language="en">
	<journal>
		<journal_title>Geoscientific Model Development Discussions</journal_title>
		<journal_url>www.geosci-model-dev-discuss.net</journal_url>
		<issn>1991-9611</issn>
		<eissn>1991-962X</eissn>
		<volume_number>1</volume_number>
		<issue_number>1</issue_number>
		<publication_year>2008</publication_year>
	</journal>
	<doi>10.5194/gmdd-1-1-2008</doi>
	<article_url>http://www.geosci-model-dev-discuss.net/1/1/2008/</article_url>
	<abstract_html>http://www.geosci-model-dev-discuss.net/1/1/2008/gmdd-1-1-2008.html</abstract_html>
	<fulltext_pdf>http://www.geosci-model-dev-discuss.net/1/1/2008/gmdd-1-1-2008.pdf</fulltext_pdf>
	<start_page>1</start_page>
	<end_page>37</end_page>
	<publication_date>2008-03-27</publication_date>
	<article_title content_type="html">GENIE-M: a new and improved GENIE-1 developed in Minnesota</article_title>
	<authors>
		<author numeration="1" affiliations="1">
			<name>K. Matsumoto</name>
			<email>katsumi@umn.edu</email>
		</author>
		<author numeration="2" affiliations="1">
			<name>K. S. Tokos</name>
		</author>
		<author numeration="3" affiliations="2">
			<name>A. Price</name>
		</author>
		<author numeration="4" affiliations="2">
			<name>S. Cox</name>
		</author>
	</authors>
	<affiliations>
		<affiliation numeration="1" content_type="html">Department of Geology and Geophysics, University of Minnesota, Minneapolis, USA</affiliation>
		<affiliation numeration="2" content_type="html">Southampton e-Science Center, Southampton, UK</affiliation>
	</affiliations>
	<abstract content_type="html">Here we describe GENIE-M, a new and improved version of the Grid ENabled
Integrated Earth system model (GENIE), which is a 3-D earth system model of
intermediate complexity. Main development goals of GENIE-M were to: (1)
bring oceanic uptake of anthropogenic transient tracers within data
constraints; (2) increase vertical resolution in the upper ocean to better
represent near-surface biogeochemical processes; (3) calibrate the deep
ocean ventilation with observed abundance of radiocarbon. We achieved all
these goals through a transparent process of calibration that mostly
consisted of objective model optimization. An important new feature in
GENIE-M that dramatically improved the uptake of CFC-11 and anthropogenic
carbon is the depth dependent vertical diffusivity in the ocean, which is
spatially uniform in GENIE-1. In GENIE-M, biological production occurs in
the top two layers above the compensation depth of 100 m and is modified,
for example, by diagnosed mixed layer depth. In contrast, production in
GENIE-1 occurs in a single layer with thickness of 175 m. These improvements
make GENIE-M a well-calibrated model of intermediate complexity suitable for
investigations of the global marine carbon cycle requiring long integration
time.</abstract>
	<references>
		<reference numeration="1" content_type="text"> Bryan, K. and Lewis, L. J.: A water mass model of the world ocean, J. Geophys. Res., 84, 2503&amp;ndash;2518, 1979. </reference>
		<reference numeration="2" content_type="text"> Claussen, M., Mysak, L. A., Weaver, A., Crucifix, M., Fichefet, T., Loutre, M. F., Weber, S. L., Alcamo, J., Alexeev, V., Berger, A. A., Calov, R., Ganopolski, A., Goosse, H., Lohmann, G., Lunkeit, F., Mokhov, I.I., Petoukhov, V., Stone, P., and Wang, Z.: Earth system models of intermediate complexity: Closing the gap in the spectrum of climate system models, Clim. Dynam., 18, 579&amp;ndash;586, 2002. </reference>
		<reference numeration="3" content_type="text"> Doney, D. C., Lindsay, K., Fung, I., and Jasmin, J.: Natural variability in a stable, 1000-year global oupled climate-carbon cycle simulation, J. Climate, 19(13), 3033&amp;ndash;3054, 2006. </reference>
		<reference numeration="4" content_type="text"> Doney, S. C., Lindsay, K., Caldeira, K., Campin, J.-M., Drange, H., Dutay, J.-C., Follows, M., Gao, Y., Gnanadesikan, A., Gruber, N., Ishida, A., Joos, F., Madec, G., Maier-Reimer, E., Marshall, J. C., Matear, R. J., Monfray, P., Najjar, R., Orr, J. C., Plattner, G.-K., Sarmiento, J., Schlitzer, R., Slater, R., Swathi, P. S., Totterdell, I. J., Weirig, M.-F., Yamanaka, Y., and Yool, A.: Evaluating global ocean carbon models: The importance of realistic physics, Global Biogeochem. Cy., 18, GB3017, doi:10.1029/2003GB002150, 2004. </reference>
		<reference numeration="5" content_type="text"> Duffy, P. B., Caldeira, K., Selvaggi, J., and Hoffert, M. I.: Effects of subgrid-scale mixing parameterizations on simulated distributions of natural 14C, temperature and salinity in a three-dimensional ocean general circulation model, J. Phys. Oceanogr., 27, 498&amp;ndash;523, 1997. </reference>
		<reference numeration="6" content_type="text"> Dutay, J.-C., Bullister, J. L., Doney, S. C., Orr, J. C., Najjar, R., Caldeira, K., Campin, J.-M., Drange, H., Follows, M., Gao, Y., Gruber, N., Hecht, M. W., Ishida, A., Joos, F., Lindsay, K., Madec, G., Maier-Reimer, E., Marshall, J. C., Matear, R. J., Monfray, P., Plattner, G.-K., Sarmiento, J., Schlitzer, R., Slater, R., Totterdell, I. J., Weirig, M.-F., Yamanaka, Y., and Yool, A.: Evaluation of ocean model ventilation with CFC-11: Comparison of 13 global ocean models, Ocean Model., 4, 89&amp;ndash;120, 2002. </reference>
		<reference numeration="7" content_type="text"> Edwards, N. R. and Marsh, R.: Uncertainties due to transport-parameter sensitivity in an efficient 3-D ocean-climate model, Clim. Dynam., 24, 415&amp;ndash;433, 2005. </reference>
		<reference numeration="8" content_type="text"> Edwards, N. R., Willmott, A. J., and Killworth, P. D.: On the role of topography and wind stress on the stability of the thermohaline circulation, J. Phys. Oceanogr., 28, 756&amp;ndash;778, 1998. </reference>
		<reference numeration="9" content_type="text"> England, M. H. and Rahmstorf, S.: Sensitivity of ventilation rates and radiocarbon uptake to subgrid-scale mixing in ocean models, J. Phys. Oceanogr., 29, 2802&amp;ndash;2827, 1999. </reference>
		<reference numeration="10" content_type="text"> Gnanadesikan, A., Dunne, J. P., Key, R. M., Matsumoto, K., Sarmiento, J. L., Slater, R. D., and Swathi, P. S.: Oceanic ventilation and biogeochemical cycling: Understanding the physical mechanisms that produce realistic distributions of tracers and productivity, Global Biogeochem. Cy., 18, GB4010, doi:10.1029/2003GB002097, 2004. </reference>
		<reference numeration="11" content_type="text"> Griffies, S. M.: The Gent-McWilliams skew flux, J. Phys. Oceanogr., 28(5), 831&amp;ndash;841, 1998. </reference>
		<reference numeration="12" content_type="text"> Griffies, S. M., Harrison, M. J., Pacanowski, R., and Rosati, A.: A technical guide to MOM4, in: GFDL ocean group technical report no. 5, NOAA/Geophysical Fluid Dynamics Laboratory, 2004. </reference>
		<reference numeration="13" content_type="text"> Gruber, N. and Sarmiento, J. L.: Global patterns of marine nitrogen fixation and denitrification, Global Biogeochem. Cy., 11, 235&amp;ndash;266, 1997. </reference>
		<reference numeration="14" content_type="text"> Houghton, J. T., Ding, Y., Griggs, D. J., Noguer, M., van der Linden, P. J., and Xiaosu, D.: Climate Change 2001 &amp;ndash;-The Scientific Basis: Contribution of Working Group I to the Third Assessment Report of the Intergovernmental Panel on Climate Change, Cambridge University Press, Cambridge, 944 pp., 2001. </reference>
		<reference numeration="15" content_type="text"> IPCC: Climate Change 2007: The Physical Science Basis, Contribution of Working Group I to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change, Cambridge University Press, Cambridge, 996 pp., 2007. </reference>
		<reference numeration="16" content_type="text"> Key, R., Kozyr, A., Sabine, C., Lee, K., Wannikhof, R., Bullister, J. L., Feeley, R. A., Millero, F., Mordy, C., and Peng, T.-H.: A global ocean carbon climatology: Results from GLODAP, Global Biogeochem. Cy., 18, GB4031, doi:10.1029/2004GB002247, 2004. </reference>
		<reference numeration="17" content_type="text"> Laws, E. A., Falkowski, P. G., Smith, W. O. J., Ducklow, H., and McCarthy, J. J.: Temperature effects on export production in the open ocean, Global Biogeochem. Cy., 14, 1231&amp;ndash;1246, 2000. </reference>
		<reference numeration="18" content_type="text"> Ledwell, J. R., Montgomery, E. T., Polzin, K. L., St. Laurent, L. C., Schmitt, R. W., and Toole, J.: Evidence for enhanced mixing over rough topography in the abyssal ocean, Nature, 403, 179&amp;ndash;182, 2000. </reference>
		<reference numeration="19" content_type="text"> Lenton, T. M., Marsh, R., Price, A. R., Lunt, D. J., Aksenov, Y., Annan, J. D., Cooper-Chadwick, T., Cox, J. D., Edwards, N. R., Goswami, S., Hargreaves, J. C., Harris, P. P., Jiao, Z., Livina, V. N., Payne, A. J., Rutte, I. C., Shepherd, J. G., Valdes, P. J., Williams, G., Williamsson, M. S., and Yool, A.: Effects of atmospheric dynamics and ocean resolution on bi-stability of the thermohaline circulation examined using the Grid ENabled Integrated Earth system modelling (GENIE) framework, Clim. Dynam., 29, 591&amp;ndash;613, doi:10.1007/s00382-007-0254-9, 2007. </reference>
		<reference numeration="20" content_type="text"> Lenton, T. M., Williamson, M. S., Edwards, N. R., Marsh, R., Price, A. R., Ridgwell, A., Shepherd, J. G., and Team, T. G.: Millenial timescale carbon cycle and climate change in an efficient Earth system model, Clim. Dynam., 26(7&amp;ndash;8), 687&amp;ndash;711, doi:10.1007/s00382-006-0109-9, 2006. </reference>
		<reference numeration="21" content_type="text"> Levitus, S.: Climatological atlas of the world ocean, National Oceanic and Atmos. Admin., Rockville, Md., 1982. </reference>
		<reference numeration="22" content_type="text"> Levitus, S. and Boyer, T. P.: World ocean atlas 1994, Vol 2, Oxygen, National Oceanic and Atmospheric Administration, Washington, 186 pp., 1994a. </reference>
		<reference numeration="23" content_type="text"> Levitus, S. and Boyer, T. P.: World ocean atlas 1994, Vol 4, Temperature, National Oceanic and Atmospheric Administration, Washington, 117 pp., 1994b. </reference>
		<reference numeration="24" content_type="text"> Maier-Reimer, E.: Geochemical cycles in an ocean general circulation model. Preindustrial tracer distributions, Global Biogeochem. Cy., 7(3), 645&amp;ndash;677, 1993. </reference>
		<reference numeration="25" content_type="text"> Marsh, R., Hazeleger, W., Yool, A., and Rohling, E.J.: Stability of the thermohaline circulation under millenial CO&lt;sub&gt;2&lt;/sub&gt; forcing and two alternative controls on Atlantic salinity, Geophys. Res. Lett., 34, L03605, doi:10.1029/2006GL027815, 2007. </reference>
		<reference numeration="26" content_type="text"> Marsh, R., Yool, A., Lenton, T. M., Gulamali, M. Y., Edwards, N. R., Shepherd, J. G., Krznaric, M., Newhouse, S., and Cox, S. J.: Bistability of the thermohaline circulation identified through comprehensive 2-parameter sweeps of an efficient climate model, Clim. Dynam., 23, 761&amp;ndash;777, 2004. </reference>
		<reference numeration="27" content_type="text"> Martin, J. H., Knauer, G. A., Karl, D. M., and Broenkow, W. W.: VERTEX: Carbon cycling in the northeast Pacific, Deep Sea Res., 34, 267&amp;ndash;285, 1987. </reference>
		<reference numeration="28" content_type="text"> Matsumoto, K.: Biology-mediated temperature control on atmospheric pCO&lt;sub&gt;2&lt;/sub&gt; and ocean biogeochemistry, Geophys. Res. Lett., 34, L20605, doi:10.1029/2007GL031301, 2007. </reference>
		<reference numeration="29" content_type="text"> Matsumoto, K. and Gruber, N.: How accurate is the estimation of anthropogenic carbon in the ocean? An evaluation of the $\Delta $C* method, Global Biogeochem. Cy., 19, GB3014, doi:10.1029/2004GB002397, 2005. </reference>
		<reference numeration="30" content_type="text"> Matsumoto, K., Sarmiento, J. L., Key, R. M., Aumont, O., Bullister, J. L., Caldeira, K., Campin, J.-M., Doney, S. C., Drange, H., Dutay, J.-C., Follows, M., Gao, Y., Gnanadesikan, A., Gruber, N., Ishida, A., Joos, F., Lindsay, K., Maier-Reimer, E., Marshall, J. C., Matear, R. J., Monfray, P., Mouchet, A., Najjar, R., Plattner, G.-K., Schlitzer, R., Slater, R., Swathi, P. S., Totterdell, I. J., Weirig, M.-F., Yamanaka, Y., Yool, A., and Orr, J. C.: Evaluation of ocean carbon cycle models with data-based metrics, Geophys. Res. Lett., 31, L07303, doi:10.1029/2003GL018970, 2004. </reference>
		<reference numeration="31" content_type="text"> Muller, S. A., Joos, F., Edwards, N. R., and Stocker, T.: Water mass distribution and ventilation time scales in cost-efficient, 3-dimensional ocean model, J. Climate, 19, 5479&amp;ndash;5499, 2006. </reference>
		<reference numeration="32" content_type="text"> Najjar, R. G., Jin, X., Louanchi, F., Aumont, O., Caldeira, K., Doney, S. C., Dutay, J.-C., Follows, M., Gruber, N., Joos, F., Lindsay, K., Maier-Reimer, E., Matear, R. J., Matsumoto, K., Monfray, P., Mouchet, A., Orr, J. C., Plattner, G. K., Sarmiento, J. L., Schlitzer, R., Weirig, M. F., Yamanaka, Y., and Yool, A.: Impact of circulation on export production, dissolved organic matter and dissolved oxygen in the ocean: Results from OCMIP-2, Global Biogeochem. Cy., 21, GB3007, doi:10.1029/2006GB002857, 2007. </reference>
		<reference numeration="33" content_type="text"> Najjar, R. G. and Orr, J.C.: Biotic-HOW TO. Internal OCMIP Report, LSCE/CEA Saclay, Gif-sur-Yvette, France, 15 pp., 1999. </reference>
		<reference numeration="34" content_type="text"> Pacanowski, R. C. and Griffies, S. M.: The MOM3 Manual, Alpha version, NOAA/Geophysical Fluid Dynamics Laboratory, Princeton, 580 pp., 1999. </reference>
		<reference numeration="35" content_type="text"> Ridgwell, A.: Interpretting transient carbonate compensation depth changes by marine sediment core modeling, Paleoceanography, 22, PA4102, doi:10.1029/2006PA001372, 2007. </reference>
		<reference numeration="36" content_type="text"> Ridgwell, A., Hargreaves, J. C., Edwards, N. R., Annan, J. D., Lenton, T. M., Marsh, R., Yool, A., and Watson, A.: Marine geochemical data assimilation in an efficient earth system model of global biogeochemical cycling, Biogeosciences, 4, 87&amp;ndash;104, 2007. </reference>
		<reference numeration="37" content_type="text"> Riebesell, U., Wolf-Gladrow, D. A., and Smetacek, V.: Carbon dioxide limitation of marine phytoplankton growth rates, Nature, 361, 249&amp;ndash;251, 1993. </reference>
		<reference numeration="38" content_type="text"> Sabine, C. L., Feeley, R. A., Gruber, N., Key, R. M., Lee, K., Bullister, J. L., Wanninkhof, R., Wong, C. S., Wallace, D. W. R., Tilbrook, B., Millero, F. J., Peng, T.-H., Kozyr, A., Ono, T., and Rios, A. F.: The oceanic sink for anthropogenic CO&lt;sub&gt;2&lt;/sub&gt;, Science, 305, 367&amp;ndash;371, 2004. </reference>
		<reference numeration="39" content_type="text"> Schlitzer, R.: Carbon export in the Southern Ocean: Results from inverse modeling and comparison with satellite-based estimates, Deep Sea Res. II, 49, 1623&amp;ndash;1644, 2002. </reference>
		<reference numeration="40" content_type="text"> Schmittner, A., Oschlies, A., Giraud, X., Eby, M., and Simmons, H. L.: A global model of the marine ecosystem for long-term simulations: Sensitivity to ocean mixing, buoyancy forcing, particle sinking, and dissolved organic matter cycling, Global Biogeochem. Cy., 19, GB3004, doi:10.1029/2004GB002283, 2005. </reference>
		<reference numeration="41" content_type="text"> Sjoberg, B. and Stigerbrandt, A.: Computations of the geographical distribution of the energy flux to mixing processes via internal tides and the associated vertical circulation in the ocean, Deep Sea Res., 39(2A), 269&amp;ndash;292, 1992. </reference>
		<reference numeration="42" content_type="text"> Sverdrup, H. U.: On conditions for the vernal blooming of phytoplankton, Journal de Conseil Permanent International pour l&apos;Exploration de la Mer, 18, 287&amp;ndash;295, 1953. </reference>
		<reference numeration="43" content_type="text"> Sweeney, C., Gloor, M., Jacobson, A., Key, R., McKinley, G., Sarmiento, J., and Wanninkhof, R.: Constraining global air-sea gas exchange for CO&lt;sub&gt;2&lt;/sub&gt; with recent bomb $^14$C measurements, Global Biogeochem. Cy., 21, GB2015, doi:10.1029/2006GB002784, 2007. </reference>
		<reference numeration="44" content_type="text"> Trenberth, K. E., Olson, J., and Large, W.: A Global Ocean Wind Stress Climatology based on ECMWF Analyses, National Center for Atmospheric Research, Boulder, 1989. </reference>
		<reference numeration="45" content_type="text"> Wanninkhof, R.: Relationship between wind speed and gas exchange over the ocean, J. Geophys. Res., 97(C5), 7373&amp;ndash;7383, 1992. </reference>
		<reference numeration="46" content_type="text"> Weaver, A., Eby, M., Wiebe, E. C., Bitz, C. M., Duffy, P. B., Ewen, T. L., Fanning, A. F., Holland, M. M., MacFadyen, A., Matthews, H. D., Meissner, K. J., Saenko, O., Schmittner, A., Wang, H., and Yoshimori, M.: The UVic earth system climate model: Model description, climatology, and applications to past, present and future climates, Atmos.-Ocean, 39, 1713&amp;ndash;1724, 2001. </reference>
		<reference numeration="47" content_type="text"> Willey, D. A., Fine, R. A., Sonnerup, R., Bullister, J. L., Smethie, M. W., and Warner, M. J.: Global oceanic chlorofluorocarbon inventory, Geophys. Res. Lett., 31, L01303, doi:10.1029/2003GL018816, 2004. </reference>
	</references>
</article>

